CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.2160 rna-evm.model.Chr15.2160 Chr15 63694397 63695461 PREDICTED: Complement C1q-like protein 4 nan K23284
gene-evm.TU.Chr15.2161 rna-evm.model.Chr15.2161 Chr15 63704962 63732994 PREDICTED: Myotubularin-related protein 14 GO:0004438;GO:0016311;GO:0016791 K18086
gene-evm.TU.Chr15.2162 rna-evm.model.Chr15.2162 Chr15 63733224 63773100 PREDICTED: GRIP1-associated protein 1 nan K16808
gene-evm.TU.Chr15.2166 rna-evm.model.Chr15.2166 Chr15 64079632 64156574 PREDICTED: Potassium voltage-gated channel protein Shal GO:0005216;GO:0005249;GO:0005515;GO:0006811;GO:0006813;GO:0008076;GO:0016020;GO:0051260;GO:0055085 K04892
gene-evm.TU.Chr15.2167 rna-evm.model.Chr15.2167 Chr15 64164809 64176343 PREDICTED: Thiosulfate sulfurtransferase nan K01011
gene-evm.TU.Chr15.2168 rna-evm.model.Chr15.2168 Chr15 64179986 64186592 PREDICTED: Mitochondrial import inner membrane translocase subunit Tim17-B nan K17795
gene-evm.TU.Chr15.2169 rna-evm.model.Chr15.2169.1 Chr15 64195833 64216753 PREDICTED: Transcription cofactor vestigial-like protein 4 GO:0006355 K23612
gene-evm.TU.Chr15.217 rna-evm.model.Chr15.217 Chr15 6346514 6353680 PREDICTED: Superoxide dismutase [Cu-Zn] GO:0006801;GO:0046872 K04565
gene-evm.TU.Chr15.2170 rna-evm.model.Chr15.2170 Chr15 64230331 64265660 PREDICTED: RNA helicase Mov10l1 GO:0003723;GO:0032574;GO:0035194 K13983
gene-evm.TU.Chr15.2171 rna-evm.model.Chr15.2171 Chr15 64277125 64315014 PREDICTED: Nischarin GO:0005515;GO:0035091 K24095

For more detailed data, you can explore the Download section to access the full dataset.