CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.2131 rna-evm.model.Chr15.2131 Chr15 63204355 63213699 PREDICTED: type IV secretion system protein VirD4 nan K25228
gene-evm.TU.Chr15.2133 rna-evm.model.Chr15.2133 Chr15 63258444 63261955 PREDICTED: Dynein heavy chain (Fragment) nan K25095
gene-evm.TU.Chr15.2135 rna-evm.model.Chr15.2135 Chr15 63435078 63438459 PREDICTED: gamma-tubulin complex component 6 nan nan
gene-evm.TU.Chr15.2136 rna-evm.model.Chr15.2136 Chr15 63438744 63439465 uncharacterized protein nan K23329
gene-evm.TU.Chr15.2138 rna-evm.model.Chr15.2138 Chr15 63388441 63510632 PREDICTED: Serine/threonine-protein kinase TBK1 GO:0004672;GO:0005515;GO:0005524;GO:0006468 K05410
gene-evm.TU.Chr15.214 rna-evm.model.Chr15.214 Chr15 6305029 6307123 PREDICTED: Angiopoietin-related protein 2 nan K25536
gene-evm.TU.Chr15.2141 rna-evm.model.Chr15.2141 Chr15 63550231 63551013 PREDICTED: zinc finger protein 862 nan K24640
gene-evm.TU.Chr15.2142 rna-evm.model.Chr15.2142 Chr15 63551329 63551940 PREDICTED: Zinc finger protein 862 nan K24642
gene-evm.TU.Chr15.2145 rna-evm.model.Chr15.2145 Chr15 63566658 63567056 PREDICTED: Pogo transposable element with KRAB domain GO:0003676 K22594
gene-evm.TU.Chr15.2147 rna-evm.model.Chr15.2147 Chr15 63569269 63569628 PREDICTED: Tigger transposable element-derived protein 2 GO:0003676 K11496

For more detailed data, you can explore the Download section to access the full dataset.