CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.215 rna-evm.model.Chr15.215 Chr15 6309806 6330290 PREDICTED: Serine protease 28 GO:0004252;GO:0006508 K09640
gene-evm.TU.Chr15.2150 rna-evm.model.Chr15.2150 Chr15 63572329 63572768 PREDICTED: Pogo transposable element with KRAB domain nan K22594
gene-evm.TU.Chr15.2151 rna-evm.model.Chr15.2151 Chr15 63573077 63577030 PREDICTED: glucuronosyltransferase [EC:2.4.1.17] GO:0003677;GO:0006310;GO:0015074 K04763
gene-evm.TU.Chr15.2152 rna-evm.model.Chr15.2152 Chr15 63579356 63602067 PREDICTED: laminin, alpha 3/5 nan K25079
gene-evm.TU.Chr15.2154 rna-evm.model.Chr15.2154 Chr15 63607093 63609955 uncharacterized protein nan nan
gene-evm.TU.Chr15.2156 rna-evm.model.Chr15.2156 Chr15 63645826 63649318 PREDICTED: UPF0691 protein C9orf116 homolog nan nan
gene-evm.TU.Chr15.2157 rna-evm.model.Chr15.2157 Chr15 63652460 63663765 PREDICTED: fibrillin 1 nan K06449
gene-evm.TU.Chr15.2158 rna-evm.model.Chr15.2158 Chr15 63669307 63675581 PREDICTED: Zinc finger imprinted 3 GO:0003676;GO:0005515 K09191
gene-evm.TU.Chr15.2159 rna-evm.model.Chr15.2159 Chr15 63676027 63688432 PREDICTED: Small lysine-rich protein 1 nan K14823
gene-evm.TU.Chr15.216 rna-evm.model.Chr15.216 Chr15 6330417 6331967 PREDICTED: zona pellucida sperm-binding protein 1 nan K26817

For more detailed data, you can explore the Download section to access the full dataset.