CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.212 rna-evm.model.Chr15.212 Chr15 6250202 6288298 PREDICTED: DCC-interacting protein 13-alpha GO:0005515 K08733
gene-evm.TU.Chr15.2120 rna-evm.model.Chr15.2120 Chr15 62879775 62898768 PREDICTED: Beta-lactamase domain-containing protein 2 nan K21469
gene-evm.TU.Chr15.2122 rna-evm.model.Chr15.2122 Chr15 62922785 62946831 PREDICTED: Pyruvate dehydrogenase E1 component subunit beta, mitochondrial GO:0004739;GO:0006086 K00162
gene-evm.TU.Chr15.2123 rna-evm.model.Chr15.2123 Chr15 62974768 62987802 PREDICTED: Pyruvate dehydrogenase E1 component subunit beta, mitochondrial GO:0004739;GO:0006086 K00162
gene-evm.TU.Chr15.2124 rna-evm.model.Chr15.2124 Chr15 62992798 62999932 PREDICTED: Phosphate carrier protein, mitochondrial nan K15102
gene-evm.TU.Chr15.2125 rna-evm.model.Chr15.2125 Chr15 63006459 63025944 PREDICTED: Inner nuclear membrane protein Man1 nan K19410
gene-evm.TU.Chr15.2127 rna-evm.model.Chr15.2127 Chr15 63031907 63032878 PREDICTED: protein kinase D [EC:2.7.11.13] nan K25448
gene-evm.TU.Chr15.2128 rna-evm.model.Chr15.2128 Chr15 63042108 63045660 PREDICTED: Serine/threonine-protein kinase pim-3 GO:0004672;GO:0005524;GO:0006468 K04702
gene-evm.TU.Chr15.2129 rna-evm.model.Chr15.2129 Chr15 63054627 63055134 PREDICTED: 300 kDa antigen AG231 (Fragment) nan K24489
gene-evm.TU.Chr15.213 rna-evm.model.Chr15.213 Chr15 6296713 6302338 PREDICTED: Angiopoietin-related protein 2 nan K25356

For more detailed data, you can explore the Download section to access the full dataset.