CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.211 rna-evm.model.Chr15.211 Chr15 6239415 6249927 PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 GO:0030234 K03037
gene-evm.TU.Chr15.2110 rna-evm.model.Chr15.2110 Chr15 62563462 62564378 uncharacterized protein nan K10135
gene-evm.TU.Chr15.2111 rna-evm.model.Chr15.2111 Chr15 62565322 62565851 PREDICTED: THAP domain-containing protein 11 nan K23222
gene-evm.TU.Chr15.2112 rna-evm.model.Chr15.2112 Chr15 62566615 62568966 PREDICTED: inner nuclear membrane protein Man1 GO:0008270 K21233
gene-evm.TU.Chr15.2113 rna-evm.model.Chr15.2113 Chr15 62573062 62576230 PREDICTED: Leukocyte receptor cluster member 9 GO:0005515 K16524
gene-evm.TU.Chr15.2114 rna-evm.model.Chr15.2114 Chr15 62577006 62581358 PREDICTED: Leukocyte receptor cluster member 9 GO:0005515 K16524
gene-evm.TU.Chr15.2115 rna-evm.model.Chr15.2115 Chr15 62584347 62599745 PREDICTED: A-kinase anchor protein 7 isoform gamma nan K16524
gene-evm.TU.Chr15.2116 rna-evm.model.Chr15.2116 Chr15 62655539 62674102 PREDICTED: Serine/threonine-protein kinase TBK1 GO:0004672;GO:0005524;GO:0006468 K05410
gene-evm.TU.Chr15.2118 rna-evm.model.Chr15.2118 Chr15 62820261 62859199 PREDICTED: E3 ubiquitin-protein ligase RNF123 GO:0005515 K12169
gene-evm.TU.Chr15.2119 rna-evm.model.Chr15.2119 Chr15 62860746 62874358 PREDICTED: Rab GDP dissociation inhibitor alpha GO:0005092;GO:0005093;GO:0007264;GO:0015031 K17255

For more detailed data, you can explore the Download section to access the full dataset.