CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.2097 rna-evm.model.Chr15.2097 Chr15 62386392 62390368 PREDICTED: Interferon-inducible GTPase 5 GO:0005525;GO:0016020 K17072
gene-evm.TU.Chr15.2099 rna-evm.model.Chr15.2099 Chr15 62418645 62419055 PREDICTED: Putative apoptosis inhibitor ORF99 nan K21504
gene-evm.TU.Chr15.21 rna-evm.model.Chr15.21 Chr15 682517 693549 PREDICTED: Coagulation factor V nan K27340
gene-evm.TU.Chr15.210 rna-evm.model.Chr15.210.4 Chr15 6148371 6235091 PREDICTED: Fibronectin GO:0005515 K05695
gene-evm.TU.Chr15.2101 rna-evm.model.Chr15.2101 Chr15 62440666 62453167 uncharacterized protein nan K25636
gene-evm.TU.Chr15.2104 rna-evm.model.Chr15.2104 Chr15 62479447 62484166 PREDICTED: Serpin B13 GO:0005615 K13963
gene-evm.TU.Chr15.2105 rna-evm.model.Chr15.2105 Chr15 62484188 62484589 PREDICTED: Serpin B13 GO:0005615 K13963
gene-evm.TU.Chr15.2106 rna-evm.model.Chr15.2106 Chr15 62485813 62507245 PREDICTED: Cyclic nucleotide-binding domain-containing protein 2 nan K19477
gene-evm.TU.Chr15.2107 rna-evm.model.Chr15.2107 Chr15 62519186 62533212 PREDICTED: Selenoprotein K nan nan
gene-evm.TU.Chr15.2108 rna-evm.model.Chr15.2108 Chr15 62543837 62551530 PREDICTED: Uncharacterized protein CXorf38 homolog nan K12805

For more detailed data, you can explore the Download section to access the full dataset.