CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.2080 rna-evm.model.Chr15.2080 Chr15 62001983 62016848 PREDICTED: E3 ubiquitin-protein ligase Hakai GO:0016567;GO:0061630 K15685
gene-evm.TU.Chr15.2081 rna-evm.model.Chr15.2081 Chr15 62022762 62029133 PREDICTED: Protein MANBAL GO:0016020 K21656
gene-evm.TU.Chr15.2082 rna-evm.model.Chr15.2082 Chr15 62032102 62043243 PREDICTED: ribonucleases P/MRP protein subunit RPP38 [EC:3.1.26.5] nan K14523
gene-evm.TU.Chr15.2086 rna-evm.model.Chr15.2086 Chr15 62111652 62115844 PREDICTED: Microtubule-associated protein 6 nan K10432
gene-evm.TU.Chr15.2087 rna-evm.model.Chr15.2087 Chr15 62115858 62117110 uncharacterized protein nan nan
gene-evm.TU.Chr15.209 rna-evm.model.Chr15.209 Chr15 6111543 6136390 PREDICTED: Serine/threonine-protein kinase Nek4 GO:0004672;GO:0005524;GO:0006468 K08857
gene-evm.TU.Chr15.2092 rna-evm.model.Chr15.2092.1 Chr15 62152166 62158795 PREDICTED: ETS domain-containing protein Elk-3 GO:0003700;GO:0006355;GO:0043565 K09430
gene-evm.TU.Chr15.2093 rna-evm.model.Chr15.2093.1 Chr15 62176838 62304543 PREDICTED: Inositol 1,4,5-trisphosphate receptor type 1 GO:0005216;GO:0005220;GO:0005262;GO:0005783;GO:0006811;GO:0006816;GO:0016020;GO:0055085;GO:0070588;GO:0070679 K04958
gene-evm.TU.Chr15.2094 rna-evm.model.Chr15.2094 Chr15 62311606 62319291 uncharacterized protein nan K06776
gene-evm.TU.Chr15.2095 rna-evm.model.Chr15.2095 Chr15 62352845 62360217 PREDICTED: Interferon-inducible GTPase 5 GO:0005525;GO:0016020 K17072

For more detailed data, you can explore the Download section to access the full dataset.