CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.2068 rna-evm.model.Chr15.2068 Chr15 61477777 61492435 PREDICTED: m7GpppX diphosphatase GO:0000290;GO:0016787 K12584
gene-evm.TU.Chr15.207 rna-evm.model.Chr15.207 Chr15 6047305 6058595 PREDICTED: Formylglycine-generating enzyme nan K13444
gene-evm.TU.Chr15.2070 rna-evm.model.Chr15.2070 Chr15 61546517 61547994 PREDICTED: Neuronal acetylcholine receptor subunit alpha-7 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr15.2071 rna-evm.model.Chr15.2071 Chr15 61553634 61556124 uncharacterized protein nan K14319
gene-evm.TU.Chr15.2072 rna-evm.model.Chr15.2072 Chr15 61658971 61667050 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 nan K21754
gene-evm.TU.Chr15.2073 rna-evm.model.Chr15.2073 Chr15 61673993 61675881 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 nan K21754
gene-evm.TU.Chr15.2075 rna-evm.model.Chr15.2075 Chr15 61789067 61789826 uncharacterized protein GO:0003677 K07483
gene-evm.TU.Chr15.2077 rna-evm.model.Chr15.2077 Chr15 61873118 61874211 PREDICTED: Protein PRQFV-amide nan K11245
gene-evm.TU.Chr15.2078_evm.TU.Chr15.2079 rna-evm.model.Chr15.2078_evm.model.Chr15.2079 Chr15 61954328 62001876 PREDICTED: Ubiquitin carboxyl-terminal hydrolase 19 GO:0016579;GO:0004843 K11847
gene-evm.TU.Chr15.208 rna-evm.model.Chr15.208.1 Chr15 6070983 6102447 PREDICTED: Putative ariadne-like RING finger protein R811 nan K13908

For more detailed data, you can explore the Download section to access the full dataset.