CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.2058 rna-evm.model.Chr15.2058 Chr15 61143265 61167984 PREDICTED: Muskelin GO:0005515 K23337
gene-evm.TU.Chr15.2059 rna-evm.model.Chr15.2059 Chr15 61173288 61179754 PREDICTED: Testis-expressed protein 264 nan K13652
gene-evm.TU.Chr15.206 rna-evm.model.Chr15.206 Chr15 6030755 6041068 PREDICTED: Formylglycine-generating enzyme nan K13444
gene-evm.TU.Chr15.2060 rna-evm.model.Chr15.2060 Chr15 61191190 61205948 PREDICTED: Kelch-like protein 20 GO:0003676;GO:0005515 K10490
gene-evm.TU.Chr15.2061 rna-evm.model.Chr15.2061 Chr15 61209470 61228011 uncharacterized protein nan K24492
gene-evm.TU.Chr15.2062 rna-evm.model.Chr15.2062 Chr15 61239993 61247434 uncharacterized protein nan nan
gene-evm.TU.Chr15.2063 rna-evm.model.Chr15.2063 Chr15 61261015 61344688 PREDICTED: Neuroglian GO:0005515 K06756
gene-evm.TU.Chr15.2064 rna-evm.model.Chr15.2064.2 Chr15 61375451 61388488 PREDICTED: Protein SSUH2 homolog nan K17479
gene-evm.TU.Chr15.2065 rna-evm.model.Chr15.2065 Chr15 61417999 61441617 PREDICTED: Protein SSUH2 homolog nan K17479
gene-evm.TU.Chr15.2066 rna-evm.model.Chr15.2066 Chr15 61452578 61461027 PREDICTED: Glutathione S-transferase 3 GO:0005515 K04097

For more detailed data, you can explore the Download section to access the full dataset.