CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.2033 rna-evm.model.Chr15.2033 Chr15 60557552 60686015 PREDICTED: Universal stress protein Sll1388 nan K06149
gene-evm.TU.Chr15.2034 rna-evm.model.Chr15.2034 Chr15 60692903 60697120 PREDICTED: Universal stress protein MJ0577 nan K06149
gene-evm.TU.Chr15.2035 rna-evm.model.Chr15.2035 Chr15 60700459 60704097 PREDICTED: Universal stress protein MJ0577 nan K06149
gene-evm.TU.Chr15.204 rna-evm.model.Chr15.204 Chr15 6005750 6018220 PREDICTED: Neuroendocrine convertase 1 GO:0004252;GO:0006508 K01360
gene-evm.TU.Chr15.2040 rna-evm.model.Chr15.2040 Chr15 60765247 60766231 uncharacterized protein nan nan
gene-evm.TU.Chr15.2045 rna-evm.model.Chr15.2045 Chr15 60808992 60811433 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 nan K19588
gene-evm.TU.Chr15.2049 rna-evm.model.Chr15.2049 Chr15 60870470 60873888 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 nan K19588
gene-evm.TU.Chr15.205 rna-evm.model.Chr15.205 Chr15 6022622 6026776 PREDICTED: U8 snoRNA-decapping enzyme GO:0016787 K16855
gene-evm.TU.Chr15.2052 rna-evm.model.Chr15.2052 Chr15 60941256 60949778 PREDICTED: LINE-1 reverse transcriptase homolog nan K26653
gene-evm.TU.Chr15.2053 rna-evm.model.Chr15.2053.1 Chr15 60952981 60964832 PREDICTED: Universal stress protein A-like protein nan K06149

For more detailed data, you can explore the Download section to access the full dataset.