CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.2020 rna-evm.model.Chr15.2020.1 Chr15 60176476 60290675 PREDICTED: Plasma membrane calcium-transporting ATPase 3 GO:0005388;GO:0005524;GO:0016020;GO:0070588 K05850
gene-evm.TU.Chr15.2020_evm.TU.Chr15.2021 rna-evm.model.Chr15.2020_evm.model.Chr15.2021 Chr15 60171374 60315206 PREDICTED: Plasma membrane calcium-transporting ATPase 3 GO:0005388;GO:0005524;GO:0016020;GO:0070588 K05850
gene-evm.TU.Chr15.2022 rna-evm.model.Chr15.2022 Chr15 60325416 60334353 PREDICTED: Nitrilase and fragile histidine triad fusion protein NitFhit GO:0003824;GO:0006807 K11206
gene-evm.TU.Chr15.2023 rna-evm.model.Chr15.2023 Chr15 60341075 60355853 PREDICTED: Stress response protein NhaX nan K06149
gene-evm.TU.Chr15.2026 rna-evm.model.Chr15.2026 Chr15 60500593 60523629 PREDICTED: [Phe13]-bombesin receptor GO:0004930;GO:0007186;GO:0016020 K04194
gene-evm.TU.Chr15.2027 rna-evm.model.Chr15.2027 Chr15 60529090 60530828 uncharacterized protein nan nan
gene-evm.TU.Chr15.2028 rna-evm.model.Chr15.2028 Chr15 60533751 60534011 PREDICTED: THAP domain-containing protein 11 nan K07227
gene-evm.TU.Chr15.2029 rna-evm.model.Chr15.2029 Chr15 60534045 60536014 PREDICTED: THAP domain-containing protein 7 GO:0003676 K23204
gene-evm.TU.Chr15.2030 rna-evm.model.Chr15.2030 Chr15 60538793 60541324 PREDICTED: Stress response protein NhaX nan K14061
gene-evm.TU.Chr15.2031 rna-evm.model.Chr15.2031 Chr15 60547466 60553085 PREDICTED: endothelin-converting enzyme [EC:3.4.24.71] nan nan

For more detailed data, you can explore the Download section to access the full dataset.