CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.2007 rna-evm.model.Chr15.2007 Chr15 59724855 59773358 PREDICTED: NUAK family SNF1-like kinase 1 GO:0004672;GO:0005524;GO:0006468 K08800
gene-evm.TU.Chr15.2008 rna-evm.model.Chr15.2008 Chr15 59784599 59796586 PREDICTED: Neural Wiskott-Aldrich syndrome protein GO:0003779;GO:0007015;GO:2000601 K05747
gene-evm.TU.Chr15.201 rna-evm.model.Chr15.201 Chr15 5945561 5993363 PREDICTED: Collagen alpha-4(VI) chain nan K06594
gene-evm.TU.Chr15.2012 rna-evm.model.Chr15.2012 Chr15 59984632 60063799 PREDICTED: Gamma-tubulin complex component 6 GO:0000226;GO:0000922;GO:0005815;GO:0007020;GO:0043015 K16573
gene-evm.TU.Chr15.2013 rna-evm.model.Chr15.2013 Chr15 60075150 60092817 PREDICTED: Serine--tRNA ligase, cytoplasmic GO:0000166;GO:0004812;GO:0004828;GO:0005524;GO:0006418;GO:0006434 K01875
gene-evm.TU.Chr15.2014 rna-evm.model.Chr15.2014 Chr15 60099849 60114047 PREDICTED: Neuroglian GO:0005515 K06756
gene-evm.TU.Chr15.2015 rna-evm.model.Chr15.2015 Chr15 60114466 60116973 PREDICTED: neuronal cell adhesion molecule nan K06756
gene-evm.TU.Chr15.2016_evm.TU.Chr15.2017 rna-evm.model.Chr15.2016_evm.model.Chr15.2017 Chr15 60119731 60143206 PREDICTED: Galaxin nan K06238
gene-evm.TU.Chr15.2019 rna-evm.model.Chr15.2019 Chr15 60183768 60187002 PREDICTED: Zinc finger protein 862 nan K24642
gene-evm.TU.Chr15.202 rna-evm.model.Chr15.202 Chr15 5994069 5996545 PREDICTED: Collagen alpha-1(XII) chain nan K06238

For more detailed data, you can explore the Download section to access the full dataset.