CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1996 rna-evm.model.Chr15.1996 Chr15 59427636 59435473 uncharacterized protein nan K18069
gene-evm.TU.Chr15.1998 rna-evm.model.Chr15.1998 Chr15 59496163 59497275 PREDICTED: Enzymatic polyprotein nan nan
gene-evm.TU.Chr15.1999 rna-evm.model.Chr15.1999 Chr15 59497349 59497843 PREDICTED: heparan sulfate 2-O-sulfotransferase HS2ST1 [EC:2.8.2.-] nan nan
gene-evm.TU.Chr15.2 rna-evm.model.Chr15.2 Chr15 22655 23074 PREDICTED: inner nuclear membrane protein Man1 nan K21233
gene-evm.TU.Chr15.20 rna-evm.model.Chr15.20 Chr15 681958 682428 PREDICTED: Glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial GO:0006450 K02435
gene-evm.TU.Chr15.200 rna-evm.model.Chr15.200 Chr15 5862448 5901296 PREDICTED: Proto-oncogene tyrosine-protein kinase receptor Ret GO:0004672;GO:0004713;GO:0005515;GO:0005524;GO:0006468 K05126
gene-evm.TU.Chr15.2002 rna-evm.model.Chr15.2002 Chr15 59571712 59604685 PREDICTED: Centrosomal protein of 41 kDa nan K16455
gene-evm.TU.Chr15.2004 rna-evm.model.Chr15.2004 Chr15 59614867 59629968 PREDICTED: Ubiquitin-like modifier-activating enzyme ATG7 GO:0005737;GO:0006914;GO:0008641 K08337
gene-evm.TU.Chr15.2005 rna-evm.model.Chr15.2005 Chr15 59654778 59688878 PREDICTED: Alpha-aminoadipic semialdehyde synthase, mitochondrial GO:0016491;GO:0055114 K14157
gene-evm.TU.Chr15.2006 rna-evm.model.Chr15.2006 Chr15 59694994 59724467 PREDICTED: Wiskott-Aldrich syndrome protein GO:0003779;GO:0007015;GO:2000601 K05747

For more detailed data, you can explore the Download section to access the full dataset.