CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1977 rna-evm.model.Chr15.1977 Chr15 58567882 58610517 PREDICTED: Laminin subunit beta-1 nan K06243
gene-evm.TU.Chr15.1979 rna-evm.model.Chr15.1979 Chr15 58693434 58711674 PREDICTED: 5-aminolevulinate synthase, nonspecific, mitochondrial GO:0009058;GO:0030170 K00643
gene-evm.TU.Chr15.198 rna-evm.model.Chr15.198 Chr15 5809799 5815608 uncharacterized protein nan K19437
gene-evm.TU.Chr15.1985 rna-evm.model.Chr15.1985 Chr15 58991873 58992520 PREDICTED: ATP-binding cassette, subfamily C (CFTR/MRP), member 4 nan K26662
gene-evm.TU.Chr15.1986 rna-evm.model.Chr15.1986 Chr15 59007899 59008580 uncharacterized protein nan nan
gene-evm.TU.Chr15.1987 rna-evm.model.Chr15.1987 Chr15 59126272 59127782 uncharacterized protein nan nan
gene-evm.TU.Chr15.1988 rna-evm.model.Chr15.1988 Chr15 59135106 59135315 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:3.6.4.-] nan nan
gene-evm.TU.Chr15.1989 rna-evm.model.Chr15.1989 Chr15 59160908 59172102 PREDICTED: Uncharacterized protein KIAA1958 nan K21754
gene-evm.TU.Chr15.199 rna-evm.model.Chr15.199 Chr15 5859915 5860871 uncharacterized protein nan nan
gene-evm.TU.Chr15.1992 rna-evm.model.Chr15.1992 Chr15 59250065 59251079 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan K25518

For more detailed data, you can explore the Download section to access the full dataset.