CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1950 rna-evm.model.Chr15.1950 Chr15 58088457 58091511 uncharacterized protein GO:0042981 K02084
gene-evm.TU.Chr15.1954 rna-evm.model.Chr15.1954 Chr15 58098205 58098534 PREDICTED: protein kinase D [EC:2.7.11.13] nan K20012
gene-evm.TU.Chr15.1955 rna-evm.model.Chr15.1955 Chr15 58106133 58106659 uncharacterized protein nan nan
gene-evm.TU.Chr15.1956 rna-evm.model.Chr15.1956 Chr15 58109938 58118928 PREDICTED: ADP-sugar pyrophosphatase GO:0016787 K13987
gene-evm.TU.Chr15.1957 rna-evm.model.Chr15.1957 Chr15 58120804 58129053 PREDICTED: calcium-responsive transcription factor nan K21595
gene-evm.TU.Chr15.1958 rna-evm.model.Chr15.1958 Chr15 58142160 58170012 PREDICTED: Neuroglian GO:0005515 K06756
gene-evm.TU.Chr15.1959 rna-evm.model.Chr15.1959 Chr15 58176337 58182298 uncharacterized protein nan K12850
gene-evm.TU.Chr15.196 rna-evm.model.Chr15.196 Chr15 5766563 5781782 PREDICTED: Serine/threonine-protein kinase PAK 2 GO:0004672;GO:0005524;GO:0006468 K04409
gene-evm.TU.Chr15.1960 rna-evm.model.Chr15.1960 Chr15 58194185 58217315 PREDICTED: Transient receptor potential cation channel subfamily V member 1 GO:0005216;GO:0006811;GO:0016020;GO:0016020;GO:0055085 K04975
gene-evm.TU.Chr15.1961 rna-evm.model.Chr15.1961 Chr15 58221027 58230027 uncharacterized protein nan K05449

For more detailed data, you can explore the Download section to access the full dataset.