CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1924 rna-evm.model.Chr15.1924 Chr15 57574082 57593381 PREDICTED: Coadhesin (Fragment) nan K16857
gene-evm.TU.Chr15.1925 rna-evm.model.Chr15.1925 Chr15 57595111 57595329 uncharacterized protein nan nan
gene-evm.TU.Chr15.1926 rna-evm.model.Chr15.1926 Chr15 57602583 57666830 PREDICTED: Sodium- and chloride-dependent GABA transporter 1 GO:0016020 K05041
gene-evm.TU.Chr15.1927 rna-evm.model.Chr15.1927 Chr15 57680443 57698586 PREDICTED: Sodium- and chloride-dependent GABA transporter 1 GO:0016020 K05041
gene-evm.TU.Chr15.1929 rna-evm.model.Chr15.1929 Chr15 57716647 57731526 PREDICTED: reverse transcriptase family protein, partial nan nan
gene-evm.TU.Chr15.1930 rna-evm.model.Chr15.1930.1 Chr15 57750547 57782770 PREDICTED: Microphthalmia-associated transcription factor GO:0046983 K09105
gene-evm.TU.Chr15.1936 rna-evm.model.Chr15.1936 Chr15 57806806 57826323 PREDICTED: G-patch domain and KOW motifs-containing protein GO:0003676 K13101
gene-evm.TU.Chr15.1937 rna-evm.model.Chr15.1937 Chr15 57830563 57840964 PREDICTED: Sterile alpha motif domain-containing protein 9-like nan K23949
gene-evm.TU.Chr15.1938 rna-evm.model.Chr15.1938 Chr15 57856563 57861701 PREDICTED: RIB43A-like with coiled-coils protein 2 nan K25475
gene-evm.TU.Chr15.194 rna-evm.model.Chr15.194.1 Chr15 5680820 5747900 uncharacterized protein nan K07523

For more detailed data, you can explore the Download section to access the full dataset.