CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1912 rna-evm.model.Chr15.1912 Chr15 57289156 57289599 PREDICTED: transcription factor SPN1 nan K04128
gene-evm.TU.Chr15.1913 rna-evm.model.Chr15.1913 Chr15 57304430 57318849 PREDICTED: Coiled-coil domain-containing protein 146 nan K24332
gene-evm.TU.Chr15.1915 rna-evm.model.Chr15.1915 Chr15 57348382 57349125 uncharacterized protein GO:0008270 K08461
gene-evm.TU.Chr15.1916 rna-evm.model.Chr15.1916 Chr15 57398182 57398499 PREDICTED: CD109 antigen nan nan
gene-evm.TU.Chr15.1917 rna-evm.model.Chr15.1917 Chr15 57401491 57422720 PREDICTED: tripartite motif-containing protein 2/3 nan K10642
gene-evm.TU.Chr15.1918 rna-evm.model.Chr15.1918 Chr15 57422953 57423291 uncharacterized protein nan nan
gene-evm.TU.Chr15.1919 rna-evm.model.Chr15.1919 Chr15 57429155 57433575 PREDICTED: Laminin subunit beta-1 nan K06675
gene-evm.TU.Chr15.192 rna-evm.model.Chr15.192 Chr15 5608184 5612027 PREDICTED: UPF0722 protein nan K25171
gene-evm.TU.Chr15.1922 rna-evm.model.Chr15.1922 Chr15 57456701 57475062 uncharacterized protein nan nan
gene-evm.TU.Chr15.1923 rna-evm.model.Chr15.1923.2 Chr15 57486605 57569145 PREDICTED: Sarcolemmal membrane-associated protein GO:0005515;GO:0006936 K26389

For more detailed data, you can explore the Download section to access the full dataset.