CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1887 rna-evm.model.Chr15.1887.14 Chr15 56488573 56555484 PREDICTED: Protein polybromo-1 GO:0003682;GO:0005515;GO:0006338;GO:0016586 K11757
gene-evm.TU.Chr15.1889 rna-evm.model.Chr15.1889 Chr15 56587650 56649030 PREDICTED: Activated Cdc42 kinase-like GO:0004672;GO:0004713;GO:0005524;GO:0006468 K18763
gene-evm.TU.Chr15.1890 rna-evm.model.Chr15.1890 Chr15 56671260 56679861 uncharacterized protein nan nan
gene-evm.TU.Chr15.1891 rna-evm.model.Chr15.1891 Chr15 56703235 56704675 PREDICTED: Suppressor of fused homolog GO:0005515 K06229
gene-evm.TU.Chr15.1892 rna-evm.model.Chr15.1892 Chr15 56704905 56715297 PREDICTED: Suppressor of fused homolog GO:0005515 K06229
gene-evm.TU.Chr15.1893 rna-evm.model.Chr15.1893 Chr15 56716820 56717525 uncharacterized protein nan nan
gene-evm.TU.Chr15.1894 rna-evm.model.Chr15.1894 Chr15 56718022 56719171 PREDICTED: dynein heavy chain, axonemal nan K26555
gene-evm.TU.Chr15.1895 rna-evm.model.Chr15.1895 Chr15 56720674 56748488 PREDICTED: Transmembrane protein 131 nan nan
gene-evm.TU.Chr15.1896 rna-evm.model.Chr15.1896 Chr15 56748525 56760097 uncharacterized protein nan K04629
gene-evm.TU.Chr15.1897 rna-evm.model.Chr15.1897 Chr15 56763594 56774301 PREDICTED: Sentrin-specific protease 2 GO:0006508;GO:0008234 K08592

For more detailed data, you can explore the Download section to access the full dataset.