CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1899 rna-evm.model.Chr15.1899 Chr15 56917966 56991324 PREDICTED: MAM and LDL-receptor class A domain-containing protein 2 (Fragment) GO:0005515;GO:0016020 K05119
gene-evm.TU.Chr15.19 rna-evm.model.Chr15.19 Chr15 655321 678846 PREDICTED: DNA repair protein complementing XP-C cells GO:0003677;GO:0003684;GO:0005634;GO:0006289 K10838
gene-evm.TU.Chr15.190 rna-evm.model.Chr15.190 Chr15 5573697 5587886 PREDICTED: Neurogenic locus Notch protein GO:0005509;GO:0007154;GO:0016020 K20994
gene-evm.TU.Chr15.1900 rna-evm.model.Chr15.1900 Chr15 56991331 57047413 PREDICTED: MAM and LDL-receptor class A domain-containing protein 1-like GO:0016020 K06724
gene-evm.TU.Chr15.1901 rna-evm.model.Chr15.1901 Chr15 57070438 57077640 PREDICTED: fumarate hydratase, class II [EC:4.2.1.2] nan K12163
gene-evm.TU.Chr15.1902 rna-evm.model.Chr15.1902 Chr15 57107719 57130918 PREDICTED: ankyrin repeat domain-containing protein 50 nan K11547
gene-evm.TU.Chr15.1903 rna-evm.model.Chr15.1903 Chr15 57168910 57170226 PREDICTED: Uncharacterized protein F54H12.2 GO:0055114 nan
gene-evm.TU.Chr15.1904 rna-evm.model.Chr15.1904 Chr15 57171110 57172210 PREDICTED: Putative uncharacterized transposon-derived protein F54H12.3 GO:0015074 K07497
gene-evm.TU.Chr15.1906 rna-evm.model.Chr15.1906 Chr15 57227784 57240479 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 nan K21754
gene-evm.TU.Chr15.191 rna-evm.model.Chr15.191 Chr15 5596476 5600896 PREDICTED: Polyubiquitin-C GO:0005515 K08770

For more detailed data, you can explore the Download section to access the full dataset.