CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1873 rna-evm.model.Chr15.1873.1 Chr15 55966951 56047032 PREDICTED: Cyclin-dependent kinase 17 GO:0004672;GO:0005524;GO:0006468 K15595
gene-evm.TU.Chr15.1874 rna-evm.model.Chr15.1874 Chr15 56058068 56133989 PREDICTED: cAMP-dependent protein kinase type II regulatory subunit nan K04739
gene-evm.TU.Chr15.1875 rna-evm.model.Chr15.1875.7 Chr15 56137342 56195028 PREDICTED: Protein polybromo-1 GO:0003682;GO:0005515;GO:0006338;GO:0016586 K11757
gene-evm.TU.Chr15.1877 rna-evm.model.Chr15.1877 Chr15 56204409 56204737 PREDICTED: protein polybromo-1 nan nan
gene-evm.TU.Chr15.1879 rna-evm.model.Chr15.1879 Chr15 56255379 56260356 PREDICTED: Probable serine/threonine-protein kinase roco6 GO:0005515;GO:0007165 K08844
gene-evm.TU.Chr15.1880 rna-evm.model.Chr15.1880 Chr15 56275006 56276043 uncharacterized protein nan K01142
gene-evm.TU.Chr15.1881 rna-evm.model.Chr15.1881 Chr15 56309516 56324710 PREDICTED: Inter-alpha-trypsin inhibitor heavy chain H3 GO:0004867;GO:0030212 K24513
gene-evm.TU.Chr15.1883 rna-evm.model.Chr15.1883 Chr15 56365122 56370543 PREDICTED: LamG domain-containing protein nan K13790
gene-evm.TU.Chr15.1884 rna-evm.model.Chr15.1884 Chr15 56392334 56435982 PREDICTED: UDP-xylose and UDP-N-acetylglucosamine transporter GO:0055085 K15278
gene-evm.TU.Chr15.1886 rna-evm.model.Chr15.1886 Chr15 56436075 56484083 PREDICTED: Ectopic P granules protein 5 homolog GO:0006914 K23883

For more detailed data, you can explore the Download section to access the full dataset.