CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1862 rna-evm.model.Chr15.1862 Chr15 55611939 55628940 PREDICTED: Vacuolar fusion protein MON1 homolog A GO:0006623 K20195
gene-evm.TU.Chr15.1864 rna-evm.model.Chr15.1864 Chr15 55638552 55760805 PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 9 GO:0004222;GO:0006508;GO:0008270 K08624
gene-evm.TU.Chr15.1865 rna-evm.model.Chr15.1865.1 Chr15 55764055 55799603 PREDICTED: Peregrin GO:0005515 K11348
gene-evm.TU.Chr15.1866 rna-evm.model.Chr15.1866 Chr15 55811007 55851032 PREDICTED: Protein phosphatase 1H GO:0003824;GO:0004722;GO:0006470 K17503
gene-evm.TU.Chr15.1867 rna-evm.model.Chr15.1867 Chr15 55857062 55866287 PREDICTED: WD repeat-containing protein 82 GO:0005515;GO:0048188 K14962
gene-evm.TU.Chr15.1868 rna-evm.model.Chr15.1868 Chr15 55870460 55886773 PREDICTED: G2 and S phase-expressed protein 1 nan K10129
gene-evm.TU.Chr15.1869 rna-evm.model.Chr15.1869 Chr15 55898292 55912297 PREDICTED: Glycerate kinase GO:0008887 K11529
gene-evm.TU.Chr15.187 rna-evm.model.Chr15.187 Chr15 5541864 5542892 PREDICTED: Transposable element Tcb2 transposase GO:0003677;GO:0006313;GO:0015074 K07494
gene-evm.TU.Chr15.1870 rna-evm.model.Chr15.1870 Chr15 55922219 55926151 PREDICTED: DnaJ homolog subfamily B member 9 nan K09515
gene-evm.TU.Chr15.1871 rna-evm.model.Chr15.1871 Chr15 55926327 55946678 PREDICTED: protein cereblon-like nan K24970

For more detailed data, you can explore the Download section to access the full dataset.