CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1849 rna-evm.model.Chr15.1849 Chr15 55225119 55225337 uncharacterized protein nan nan
gene-evm.TU.Chr15.1850 rna-evm.model.Chr15.1850 Chr15 55230012 55237552 PREDICTED: leucine-rich repeat protein SHOC2 nan K13052
gene-evm.TU.Chr15.1852 rna-evm.model.Chr15.1852 Chr15 55260851 55295126 PREDICTED: Inter-alpha-trypsin inhibitor heavy chain H3 GO:0004867;GO:0030212 K24513
gene-evm.TU.Chr15.1853 rna-evm.model.Chr15.1853 Chr15 55305316 55354706 PREDICTED: Leucine-rich repeat serine/threonine-protein kinase 2 GO:0004672;GO:0005515;GO:0005524;GO:0006468 K08844
gene-evm.TU.Chr15.1854 rna-evm.model.Chr15.1854 Chr15 55417489 55449845 PREDICTED: Atrial natriuretic peptide receptor 1 GO:0004672;GO:0005524;GO:0006468;GO:0009190;GO:0016020;GO:0016849;GO:0035556 K12323
gene-evm.TU.Chr15.1855 rna-evm.model.Chr15.1855 Chr15 55450725 55464377 PREDICTED: collagen, type VIII, alpha nan K23284
gene-evm.TU.Chr15.1856 rna-evm.model.Chr15.1856 Chr15 55471002 55472113 PREDICTED: Multimerin-1 nan K24236
gene-evm.TU.Chr15.1858 rna-evm.model.Chr15.1858 Chr15 55480402 55515203 PREDICTED: Striatin-interacting protein 1 nan nan
gene-evm.TU.Chr15.1860 rna-evm.model.Chr15.1860 Chr15 55527811 55529306 PREDICTED: Protein BTG1 nan K14443
gene-evm.TU.Chr15.1861 rna-evm.model.Chr15.1861 Chr15 55538435 55595630 PREDICTED: Inositol-pentakisphosphate 2-kinase GO:0005524;GO:0035299 K10572

For more detailed data, you can explore the Download section to access the full dataset.