CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1838 rna-evm.model.Chr15.1838 Chr15 54847568 54860301 PREDICTED: Mitochondrial tRNA-specific 2-thiouridylase 1 nan K21027
gene-evm.TU.Chr15.1839 rna-evm.model.Chr15.1839 Chr15 55016291 55038823 PREDICTED: Coagulation factor X GO:0004252;GO:0006508 K01313
gene-evm.TU.Chr15.184 rna-evm.model.Chr15.184 Chr15 5358125 5359052 PREDICTED: Tigger transposable element-derived protein 2 GO:0003676 K07494
gene-evm.TU.Chr15.1840 rna-evm.model.Chr15.1840 Chr15 55080866 55115787 PREDICTED: Coagulation factor X GO:0004252;GO:0006508 K01313
gene-evm.TU.Chr15.1841 rna-evm.model.Chr15.1841 Chr15 55125163 55127206 PREDICTED: Carbohydrate sulfotransferase 3 GO:0008146 K01022
gene-evm.TU.Chr15.1842 rna-evm.model.Chr15.1842 Chr15 55167810 55177525 uncharacterized protein nan K06546
gene-evm.TU.Chr15.1843 rna-evm.model.Chr15.1843 Chr15 55179806 55182231 PREDICTED: S-crystallin SL11 GO:0005515 K04097
gene-evm.TU.Chr15.1844 rna-evm.model.Chr15.1844 Chr15 55185614 55189405 PREDICTED: S-crystallin SL11 GO:0005515 K04097
gene-evm.TU.Chr15.1845 rna-evm.model.Chr15.1845 Chr15 55200647 55203764 PREDICTED: S-crystallin 3 GO:0005515 K04097
gene-evm.TU.Chr15.1847 rna-evm.model.Chr15.1847 Chr15 55214335 55215829 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.