CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1817 rna-evm.model.Chr15.1817 Chr15 54392262 54393403 uncharacterized protein nan K14559
gene-evm.TU.Chr15.1818 rna-evm.model.Chr15.1818 Chr15 54453495 54454562 PREDICTED: Kappa-type opioid receptor GO:0004930;GO:0007186;GO:0016020 K04284
gene-evm.TU.Chr15.1819 rna-evm.model.Chr15.1819 Chr15 54464962 54465987 PREDICTED: Apelin receptor GO:0004930;GO:0007186;GO:0016020 K04284
gene-evm.TU.Chr15.1820 rna-evm.model.Chr15.1820.1 Chr15 54489216 54499601 PREDICTED: Protein rolling stone nan K01530
gene-evm.TU.Chr15.1821 rna-evm.model.Chr15.1821 Chr15 54545180 54570253 PREDICTED: POC1 centriolar protein homolog A GO:0005515 K16482
gene-evm.TU.Chr15.1822 rna-evm.model.Chr15.1822 Chr15 54573411 54574564 PREDICTED: Short-chain collagen C4 (Fragment) nan nan
gene-evm.TU.Chr15.1823 rna-evm.model.Chr15.1823 Chr15 54576688 54578718 uncharacterized protein nan K11997
gene-evm.TU.Chr15.1824 rna-evm.model.Chr15.1824 Chr15 54585417 54615061 PREDICTED: SCO-spondin nan K16857
gene-evm.TU.Chr15.1825 rna-evm.model.Chr15.1825 Chr15 54628100 54633658 PREDICTED: Glycine-rich domain-containing protein 1 nan K19180
gene-evm.TU.Chr15.1826 rna-evm.model.Chr15.1826 Chr15 54634613 54640734 PREDICTED: Heat shock 70 kDa protein 12B nan K04043

For more detailed data, you can explore the Download section to access the full dataset.