CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1804 rna-evm.model.Chr15.1804 Chr15 53539707 53540877 PREDICTED: Beta-1,3-galactosyltransferase 5 (Fragment) GO:0006486;GO:0008378;GO:0016020 K07819
gene-evm.TU.Chr15.1805 rna-evm.model.Chr15.1805 Chr15 53637523 53637937 uncharacterized protein nan K21754
gene-evm.TU.Chr15.1806 rna-evm.model.Chr15.1806 Chr15 53638552 53640913 uncharacterized protein nan nan
gene-evm.TU.Chr15.1809 rna-evm.model.Chr15.1809 Chr15 53783662 53784960 PREDICTED: protein kinase D [EC:2.7.11.13] nan K16308
gene-evm.TU.Chr15.1810 rna-evm.model.Chr15.1810 Chr15 53926109 53936676 PREDICTED: Histamine H1 receptor GO:0004930;GO:0005886;GO:0007186;GO:0016020;GO:0016907 K04149
gene-evm.TU.Chr15.1811 rna-evm.model.Chr15.1811 Chr15 54175787 54176704 PREDICTED: protein kinase D [EC:2.7.11.13] nan K04949
gene-evm.TU.Chr15.1813 rna-evm.model.Chr15.1813 Chr15 54286324 54287151 PREDICTED: p24 family protein gamma-2 nan K24973
gene-evm.TU.Chr15.1814 rna-evm.model.Chr15.1814 Chr15 54297498 54302924 PREDICTED: Adiponectin receptor protein GO:0016020 K07297
gene-evm.TU.Chr15.1815 rna-evm.model.Chr15.1815 Chr15 54309554 54367532 PREDICTED: Sortilin GO:0016020 K12388
gene-evm.TU.Chr15.1816 rna-evm.model.Chr15.1816 Chr15 54379393 54390444 PREDICTED: zinc finger and BTB domain-containing protein 45 nan nan

For more detailed data, you can explore the Download section to access the full dataset.