CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1795 rna-evm.model.Chr15.1795 Chr15 53216486 53219759 uncharacterized protein nan K01992
gene-evm.TU.Chr15.1796 rna-evm.model.Chr15.1796 Chr15 53231328 53238802 uncharacterized protein nan K01992
gene-evm.TU.Chr15.1798 rna-evm.model.Chr15.1798 Chr15 53330575 53345445 PREDICTED: Ubiquitin-conjugating enzyme E2 H nan K10576
gene-evm.TU.Chr15.1799 rna-evm.model.Chr15.1799 Chr15 53355751 53363873 uncharacterized protein nan nan
gene-evm.TU.Chr15.18 rna-evm.model.Chr15.18 Chr15 639641 648883 PREDICTED: neuronal calcium sensor 1 GO:0005509 K23847
gene-evm.TU.Chr15.180 rna-evm.model.Chr15.180 Chr15 5174200 5189008 PREDICTED: Tigger transposable element-derived protein 2 GO:0003676 K01152
gene-evm.TU.Chr15.1800 rna-evm.model.Chr15.1800 Chr15 53363917 53371967 PREDICTED: Carbohydrate sulfotransferase 11 GO:0008146;GO:0016020;GO:0016051 K01017
gene-evm.TU.Chr15.1801 rna-evm.model.Chr15.1801 Chr15 53387706 53400417 PREDICTED: mitochondrial ribonuclease P protein 1 [EC:2.1.1.-] nan K17654
gene-evm.TU.Chr15.1802 rna-evm.model.Chr15.1802 Chr15 53400635 53417674 PREDICTED: Mesoderm-specific transcript homolog protein GO:0003824 K01563
gene-evm.TU.Chr15.1803 rna-evm.model.Chr15.1803 Chr15 53430592 53450217 PREDICTED: Mesoderm-specific transcript protein GO:0003824 K01563

For more detailed data, you can explore the Download section to access the full dataset.