CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1781 rna-evm.model.Chr15.1781 Chr15 52475076 52483647 PREDICTED: Emerin homolog 1 nan K24031
gene-evm.TU.Chr15.1782 rna-evm.model.Chr15.1782 Chr15 52484343 52492011 PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 GO:0004518;GO:0006281;GO:0008270 K10772
gene-evm.TU.Chr15.1783 rna-evm.model.Chr15.1783 Chr15 52493896 52581136 PREDICTED: Uncharacterized WD repeat-containing protein sll0163 GO:0005515 K02084
gene-evm.TU.Chr15.1784 rna-evm.model.Chr15.1784 Chr15 52587167 52593077 PREDICTED: jagged-1 nan K24469
gene-evm.TU.Chr15.1785 rna-evm.model.Chr15.1785 Chr15 52612992 52616642 uncharacterized protein GO:0016020 K06087
gene-evm.TU.Chr15.1787 rna-evm.model.Chr15.1787 Chr15 52840629 52841232 PREDICTED: striatin 1/3/4 nan K22804
gene-evm.TU.Chr15.1789 rna-evm.model.Chr15.1789 Chr15 52903140 52903424 uncharacterized protein nan nan
gene-evm.TU.Chr15.1791 rna-evm.model.Chr15.1791 Chr15 53061074 53066647 uncharacterized protein nan K08179
gene-evm.TU.Chr15.1793 rna-evm.model.Chr15.1793.1 Chr15 53031908 53183673 PREDICTED: Plexin-B GO:0005515;GO:0017154;GO:0071526 K06820
gene-evm.TU.Chr15.1794 rna-evm.model.Chr15.1794 Chr15 53190307 53212829 PREDICTED: Metabotropic glutamate receptor 5 GO:0004930;GO:0007186;GO:0016020 K04609

For more detailed data, you can explore the Download section to access the full dataset.