CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1771 rna-evm.model.Chr15.1771.2 Chr15 52178348 52224961 PREDICTED: Tyrosine-protein phosphatase 99A GO:0004725;GO:0005515;GO:0006470;GO:0016311;GO:0016791 K16667
gene-evm.TU.Chr15.1772 rna-evm.model.Chr15.1772 Chr15 52236143 52267376 PREDICTED: Dual specificity protein phosphatase 7 GO:0006470;GO:0008138;GO:0016311;GO:0016791;GO:0017017 K21946
gene-evm.TU.Chr15.1773 rna-evm.model.Chr15.1773 Chr15 52268423 52311611 PREDICTED: Leucine-rich repeat-containing protein 74A GO:0005509;GO:0005515 K22615
gene-evm.TU.Chr15.1774 rna-evm.model.Chr15.1774 Chr15 52313028 52318350 uncharacterized protein nan nan
gene-evm.TU.Chr15.1775 rna-evm.model.Chr15.1775 Chr15 52318628 52320371 PREDICTED: Dopamine N-acetyltransferase nan K20838
gene-evm.TU.Chr15.1777 rna-evm.model.Chr15.1777 Chr15 52386825 52387047 uncharacterized protein nan nan
gene-evm.TU.Chr15.1778 rna-evm.model.Chr15.1778 Chr15 52392638 52401115 uncharacterized protein nan nan
gene-evm.TU.Chr15.1779 rna-evm.model.Chr15.1779 Chr15 52403660 52420606 PREDICTED: Fibropellin-1 GO:0005509 K20994
gene-evm.TU.Chr15.178 rna-evm.model.Chr15.178 Chr15 5119408 5126684 PREDICTED: Ankyrin repeat and SOCS box protein 9 GO:0005515 K10327
gene-evm.TU.Chr15.1780 rna-evm.model.Chr15.1780 Chr15 52452382 52463689 PREDICTED: Paired box pox-neuro protein GO:0003677;GO:0006355 K09383

For more detailed data, you can explore the Download section to access the full dataset.