CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1760 rna-evm.model.Chr15.1760 Chr15 51872191 51872763 PREDICTED: serine/arginine repetitive matrix protein 2 GO:0016788 K10804
gene-evm.TU.Chr15.1761 rna-evm.model.Chr15.1761 Chr15 51892578 51894413 PREDICTED: PiggyBac transposable element-derived protein 4 nan K12035
gene-evm.TU.Chr15.1762 rna-evm.model.Chr15.1762 Chr15 51907108 51914527 PREDICTED: Protein arginine N-methyltransferase 6 GO:0006479;GO:0008168 K11437
gene-evm.TU.Chr15.1763 rna-evm.model.Chr15.1763 Chr15 51985515 51998594 PREDICTED: UDP-galactose translocator GO:0000139;GO:0015165;GO:0016020;GO:0090481 K15272
gene-evm.TU.Chr15.1764 rna-evm.model.Chr15.1764 Chr15 52012621 52038308 PREDICTED: UDP-galactose translocator GO:0000139;GO:0015165;GO:0016020;GO:0090481 K15272
gene-evm.TU.Chr15.1765 rna-evm.model.Chr15.1765 Chr15 52048660 52055618 uncharacterized protein nan K06578
gene-evm.TU.Chr15.1767 rna-evm.model.Chr15.1767 Chr15 52086031 52123561 PREDICTED: Uncharacterized protein MJ1187 nan K05521
gene-evm.TU.Chr15.1768 rna-evm.model.Chr15.1768 Chr15 52127573 52144537 PREDICTED: Leucine-rich repeat and guanylate kinase domain-containing protein GO:0005515 K25549
gene-evm.TU.Chr15.1769 rna-evm.model.Chr15.1769 Chr15 52145060 52146812 PREDICTED: 28S ribosomal protein S33, mitochondrial nan K17411
gene-evm.TU.Chr15.1770 rna-evm.model.Chr15.1770 Chr15 52153536 52171479 PREDICTED: Death domain-containing protein CRADD GO:0005515;GO:0007165;GO:0042981 K02832

For more detailed data, you can explore the Download section to access the full dataset.