CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.175 rna-evm.model.Chr15.175 Chr15 5056294 5063148 PREDICTED: Putative ariadne-like RING finger protein R811 GO:0005515 K05791
gene-evm.TU.Chr15.1750 rna-evm.model.Chr15.1750 Chr15 51627725 51665112 uncharacterized protein nan K03528
gene-evm.TU.Chr15.1751 rna-evm.model.Chr15.1751 Chr15 51703057 51711309 uncharacterized protein nan K05718
gene-evm.TU.Chr15.1752 rna-evm.model.Chr15.1752 Chr15 51721807 51746618 uncharacterized protein nan K24500
gene-evm.TU.Chr15.1753 rna-evm.model.Chr15.1753 Chr15 51764486 51770192 PREDICTED: protein transport protein SEC24 nan K10135
gene-evm.TU.Chr15.1754 rna-evm.model.Chr15.1754 Chr15 51787342 51790651 uncharacterized protein nan K18477
gene-evm.TU.Chr15.1757 rna-evm.model.Chr15.1757 Chr15 51867469 51868377 PREDICTED: vomeronasal 2 receptor nan K04763
gene-evm.TU.Chr15.1758 rna-evm.model.Chr15.1758 Chr15 51868398 51869756 PREDICTED: myotubularin-related protein 10/11/12 nan K21037
gene-evm.TU.Chr15.1759 rna-evm.model.Chr15.1759 Chr15 51869953 51871122 uncharacterized protein nan nan
gene-evm.TU.Chr15.176 rna-evm.model.Chr15.176 Chr15 5085462 5093642 PREDICTED: Eukaryotic translation initiation factor 4E type 3 GO:0003723;GO:0003743;GO:0006413 K03259

For more detailed data, you can explore the Download section to access the full dataset.