CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1728 rna-evm.model.Chr15.1728 Chr15 51196699 51205441 PREDICTED: EEF1A lysine methyltransferase 2 nan K22856
gene-evm.TU.Chr15.173 rna-evm.model.Chr15.173 Chr15 4513769 4537520 PREDICTED: Protein mono-ADP-ribosyltransferase PARP14 nan K15261
gene-evm.TU.Chr15.1730 rna-evm.model.Chr15.1730 Chr15 51233112 51256357 PREDICTED: Copine-8 nan K24523
gene-evm.TU.Chr15.1731 rna-evm.model.Chr15.1731 Chr15 51288917 51289304 uncharacterized protein nan K07499
gene-evm.TU.Chr15.1733 rna-evm.model.Chr15.1733 Chr15 51297598 51303517 PREDICTED: Putative Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase GO:0004583;GO:0005789;GO:0006488 K03850
gene-evm.TU.Chr15.1734 rna-evm.model.Chr15.1734 Chr15 51310323 51339331 PREDICTED: Serine/threonine-protein kinase TBK1 GO:0004672;GO:0005524;GO:0006468 K05410
gene-evm.TU.Chr15.1735 rna-evm.model.Chr15.1735 Chr15 51366019 51366633 PREDICTED: Melatonin receptor type 1B GO:0004930;GO:0007186;GO:0016020 K04286
gene-evm.TU.Chr15.1737 rna-evm.model.Chr15.1737 Chr15 51398258 51400695 PREDICTED: Melatonin receptor type 1C GO:0004930;GO:0007186;GO:0016020 K04286
gene-evm.TU.Chr15.1738 rna-evm.model.Chr15.1738 Chr15 51414877 51417612 PREDICTED: Melatonin receptor type 1B GO:0004930;GO:0007186;GO:0016020 K04286
gene-evm.TU.Chr15.174 rna-evm.model.Chr15.174 Chr15 4940480 5048401 PREDICTED: E3 ubiquitin-protein ligase rnf213-alpha GO:0004842;GO:0005524;GO:0006915;GO:0016887 K22754

For more detailed data, you can explore the Download section to access the full dataset.