CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1699 rna-evm.model.Chr15.1699 Chr15 50021824 50050642 PREDICTED: C-factor nan K17644
gene-evm.TU.Chr15.17 rna-evm.model.Chr15.17 Chr15 620205 637042 PREDICTED: Polynucleotide 5'-hydroxyl-kinase NOL9 nan K06947
gene-evm.TU.Chr15.170 rna-evm.model.Chr15.170 Chr15 4128694 4133287 uncharacterized protein nan K10212
gene-evm.TU.Chr15.1700 rna-evm.model.Chr15.1700.1 Chr15 50048576 50174759 PREDICTED: G protein-coupled receptor kinase interactor 2 nan K25697
gene-evm.TU.Chr15.1701 rna-evm.model.Chr15.1701 Chr15 50180360 50206047 PREDICTED: Glutamine--tRNA ligase GO:0000166;GO:0004812;GO:0005524;GO:0005737;GO:0006418;GO:0043039 K01886
gene-evm.TU.Chr15.1702 rna-evm.model.Chr15.1702 Chr15 50210963 50219916 PREDICTED: MICOS complex subunit Mic19 nan K17563
gene-evm.TU.Chr15.1703 rna-evm.model.Chr15.1703 Chr15 50224452 50251821 uncharacterized protein nan K23881
gene-evm.TU.Chr15.1705 rna-evm.model.Chr15.1705 Chr15 50254684 50321106 PREDICTED: TBC1 domain family member 30 nan K24800
gene-evm.TU.Chr15.1706 rna-evm.model.Chr15.1706 Chr15 50321404 50326257 PREDICTED: Thioredoxin-like protein 4B GO:0000398;GO:0046540 K12859
gene-evm.TU.Chr15.1707 rna-evm.model.Chr15.1707.1 Chr15 50387076 50454624 PREDICTED: Suppressor of tumorigenicity 7 protein homolog nan K26678

For more detailed data, you can explore the Download section to access the full dataset.