CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1673 rna-evm.model.Chr15.1673 Chr15 49220429 49222741 uncharacterized protein nan nan
gene-evm.TU.Chr15.1676 rna-evm.model.Chr15.1676 Chr15 49247341 49283830 PREDICTED: Transmembrane protein 43 nan K04763
gene-evm.TU.Chr15.1677 rna-evm.model.Chr15.1677 Chr15 49296115 49302274 uncharacterized protein nan nan
gene-evm.TU.Chr15.1678 rna-evm.model.Chr15.1678 Chr15 49307367 49311810 uncharacterized protein nan nan
gene-evm.TU.Chr15.1679 rna-evm.model.Chr15.1679 Chr15 49324863 49453530 PREDICTED: Ubiquitin-like protein 4A GO:0005515 K23388
gene-evm.TU.Chr15.1680 rna-evm.model.Chr15.1680 Chr15 49453741 49458251 PREDICTED: Uncharacterized protein C1orf194 homolog nan nan
gene-evm.TU.Chr15.1681 rna-evm.model.Chr15.1681 Chr15 49469821 49470927 PREDICTED: Orexin receptor type 1 GO:0004930;GO:0007186;GO:0016020 K04238
gene-evm.TU.Chr15.1683 rna-evm.model.Chr15.1683 Chr15 49503096 49515280 PREDICTED: RNA polymerase II-associated protein 3 GO:0005515 K23002
gene-evm.TU.Chr15.1684 rna-evm.model.Chr15.1684 Chr15 49589482 49592664 PREDICTED: Telomerase reverse transcriptase nan K11126
gene-evm.TU.Chr15.1685 rna-evm.model.Chr15.1685 Chr15 49617925 49624161 PREDICTED: rhoptry-associated leucine zipper-like protein 1 nan K04139

For more detailed data, you can explore the Download section to access the full dataset.