CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1660 rna-evm.model.Chr15.1660 Chr15 48763046 48789334 PREDICTED: prolipoprotein diacylglyceryl transferase GO:0003676;GO:0008270 K12896
gene-evm.TU.Chr15.1661 rna-evm.model.Chr15.1661 Chr15 48805832 48808071 PREDICTED: tripartite motif-containing protein 39 [EC:2.3.2.27] nan K12035
gene-evm.TU.Chr15.1662 rna-evm.model.Chr15.1662 Chr15 48830586 48831598 uncharacterized protein nan K12026
gene-evm.TU.Chr15.1664 rna-evm.model.Chr15.1664 Chr15 48879430 48900579 uncharacterized protein nan nan
gene-evm.TU.Chr15.1665 rna-evm.model.Chr15.1665 Chr15 48900603 48908148 uncharacterized protein nan K25448
gene-evm.TU.Chr15.1667 rna-evm.model.Chr15.1667 Chr15 49021535 49044286 PREDICTED: E1A/CREB-binding protein [EC:2.3.1.48] nan nan
gene-evm.TU.Chr15.1668 rna-evm.model.Chr15.1668 Chr15 49131192 49160814 PREDICTED: Ribitol-5-phosphate xylosyltransferase 1 nan K21052
gene-evm.TU.Chr15.1669 rna-evm.model.Chr15.1669 Chr15 49122483 49172378 PREDICTED: THUMP domain-containing protein 3 GO:0003723 K16318
gene-evm.TU.Chr15.167_evm.TU.Chr15.168 rna-evm.model.Chr15.167_evm.model.Chr15.168 Chr15 4076588 4113950 PREDICTED: Copine-8 nan K24523
gene-evm.TU.Chr15.1671 rna-evm.model.Chr15.1671 Chr15 49205088 49205876 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 nan K04763

For more detailed data, you can explore the Download section to access the full dataset.