CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1649 rna-evm.model.Chr15.1649 Chr15 48420283 48421041 PREDICTED: L-xylulose reductase nan K03331
gene-evm.TU.Chr15.1651 rna-evm.model.Chr15.1651 Chr15 48426560 48436022 PREDICTED: protocadherin Fat 4 nan K16503
gene-evm.TU.Chr15.1652 rna-evm.model.Chr15.1652 Chr15 48455585 48489548 PREDICTED: Protocadherin Fat 4 GO:0005509;GO:0007156;GO:0016020;GO:0098609 K04600
gene-evm.TU.Chr15.1653 rna-evm.model.Chr15.1653 Chr15 48505053 48510602 PREDICTED: Tumor suppressor candidate 2 nan nan
gene-evm.TU.Chr15.1654 rna-evm.model.Chr15.1654 Chr15 48515521 48578010 PREDICTED: Calcium/calmodulin-dependent protein kinase type 1 GO:0004672;GO:0005524;GO:0006468 K08794
gene-evm.TU.Chr15.1655 rna-evm.model.Chr15.1655 Chr15 48597504 48612461 PREDICTED: tyrosine-protein phosphatase non-receptor type 11 [EC:3.1.3.48] GO:0005515 K05859
gene-evm.TU.Chr15.1656 rna-evm.model.Chr15.1656 Chr15 48681002 48681250 uncharacterized protein nan nan
gene-evm.TU.Chr15.1657 rna-evm.model.Chr15.1657 Chr15 48706800 48709595 PREDICTED: Potassium voltage-gated channel subfamily A member 1 GO:0005216;GO:0005249;GO:0006811;GO:0006813;GO:0008076;GO:0016020;GO:0051260;GO:0055085 K04887
gene-evm.TU.Chr15.1659 rna-evm.model.Chr15.1659 Chr15 48762275 48762866 uncharacterized protein nan K24692
gene-evm.TU.Chr15.166 rna-evm.model.Chr15.166 Chr15 3939298 3939969 PREDICTED: organic solute transporter subunit alpha GO:0003676;GO:0008270 K25664

For more detailed data, you can explore the Download section to access the full dataset.