CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1384 rna-evm.model.Chr14.1384 Chr14 43013600 43017374 PREDICTED: E3 ubiquitin-protein ligase TRIM50 nan K12035
gene-evm.TU.Chr14.1385 rna-evm.model.Chr14.1385 Chr14 43020195 43051461 PREDICTED: Procollagen galactosyltransferase 1 nan K11703
gene-evm.TU.Chr14.1387 rna-evm.model.Chr14.1387 Chr14 43129699 43142305 PREDICTED: Carbohydrate sulfotransferase 15 GO:0008146 K08106
gene-evm.TU.Chr14.139 rna-evm.model.Chr14.139 Chr14 4736668 4748488 PREDICTED: Zinc metalloproteinase nas-6 GO:0004222;GO:0004252;GO:0005044;GO:0006508;GO:0016020 K08076
gene-evm.TU.Chr14.1390 rna-evm.model.Chr14.1390 Chr14 43218401 43220374 PREDICTED: Zinc finger BED domain-containing protein 1 GO:0046983 K24637
gene-evm.TU.Chr14.1391 rna-evm.model.Chr14.1391 Chr14 43220396 43221115 PREDICTED: Zinc finger BED domain-containing protein 4 GO:0003677 K24637
gene-evm.TU.Chr14.1392 rna-evm.model.Chr14.1392 Chr14 43282403 43284166 PREDICTED: Dynein heavy chain (Fragment) nan nan
gene-evm.TU.Chr14.1393 rna-evm.model.Chr14.1393 Chr14 43308946 43317430 uncharacterized protein GO:0003676 K23204
gene-evm.TU.Chr14.1394 rna-evm.model.Chr14.1394 Chr14 43311357 43345946 PREDICTED: glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase [EC:2.4.1.122] nan K25363
gene-evm.TU.Chr14.1395 rna-evm.model.Chr14.1395 Chr14 43349487 43361608 PREDICTED: CD209 antigen nan K06563

For more detailed data, you can explore the Download section to access the full dataset.