CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.265 rna-evm.model.Chr10.265 Chr10 8819784 8827263 PREDICTED: Putative ferric-chelate reductase 1 nan K24427
gene-evm.TU.Chr10.266 rna-evm.model.Chr10.266 Chr10 8838775 8852534 PREDICTED: Glycosyltransferase 8 domain-containing protein 1 GO:0016757 K20867
gene-evm.TU.Chr10.267 rna-evm.model.Chr10.267 Chr10 8856123 8862804 PREDICTED: Ferrochelatase, mitochondrial GO:0004325;GO:0006783 K01772
gene-evm.TU.Chr10.268 rna-evm.model.Chr10.268 Chr10 8889644 8903178 PREDICTED: Ferrochelatase, mitochondrial GO:0004325;GO:0006783 K01772
gene-evm.TU.Chr10.269 rna-evm.model.Chr10.269 Chr10 8912108 8914379 PREDICTED: Acetylcholine receptor subunit alpha-type unc-38 GO:0005230;GO:0006811;GO:0016020 K04808
gene-evm.TU.Chr10.27 rna-evm.model.Chr10.27 Chr10 718728 724371 PREDICTED: Helicase with zinc finger domain 2 GO:0030374 K25165
gene-evm.TU.Chr10.270 rna-evm.model.Chr10.270 Chr10 8917624 8920243 PREDICTED: Acetylcholine receptor subunit gamma GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr10.273 rna-evm.model.Chr10.273 Chr10 8957418 8976025 PREDICTED: Mitochondrial 2-oxoglutarate/malate carrier protein GO:0006839;GO:0031966 K15104
gene-evm.TU.Chr10.275 rna-evm.model.Chr10.275 Chr10 8983745 9045373 PREDICTED: High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A GO:0004114;GO:0007165;GO:0008081 K13761
gene-evm.TU.Chr10.276 rna-evm.model.Chr10.276 Chr10 9065507 9079275 PREDICTED: Protein mono-ADP-ribosyltransferase PARP12 GO:0003950;GO:0046872 K15259

For more detailed data, you can explore the Download section to access the full dataset.