CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1506 rna-evm.model.Chr10.1506 Chr10 47781433 47782257 PREDICTED: organic solute transporter subunit alpha GO:0003676;GO:0008270 K17578
gene-evm.TU.Chr10.1507 rna-evm.model.Chr10.1507 Chr10 47824589 47835974 PREDICTED: Endoglucanase E-4 GO:0004553;GO:0005975 K01179
gene-evm.TU.Chr10.151 rna-evm.model.Chr10.151 Chr10 5182044 5194450 uncharacterized protein nan nan
gene-evm.TU.Chr10.1510 rna-evm.model.Chr10.1510 Chr10 47911311 47920110 PREDICTED: Putative inorganic phosphate cotransporter GO:0016020;GO:0055085 K12301
gene-evm.TU.Chr10.1511 rna-evm.model.Chr10.1511 Chr10 47933020 47940457 PREDICTED: Sialin GO:0016020;GO:0055085 K12301
gene-evm.TU.Chr10.1512 rna-evm.model.Chr10.1512 Chr10 47960307 47981778 PREDICTED: Leucine-rich repeat and fibronectin type-III domain-containing protein 5 GO:0005515 K08462
gene-evm.TU.Chr10.1513 rna-evm.model.Chr10.1513 Chr10 47982874 47984067 PREDICTED: Orexin receptor type 2 GO:0004930;GO:0007186;GO:0016020 K04238
gene-evm.TU.Chr10.1516 rna-evm.model.Chr10.1516 Chr10 47995797 47997984 PREDICTED: Halomucin nan K13717
gene-evm.TU.Chr10.1518 rna-evm.model.Chr10.1518 Chr10 48008119 48012835 uncharacterized protein nan K26653
gene-evm.TU.Chr10.1519 rna-evm.model.Chr10.1519.1 Chr10 48016453 48084508 PREDICTED: Unconventional myosin-Id GO:0003774;GO:0005515;GO:0005524;GO:0016459 K10356

For more detailed data, you can explore the Download section to access the full dataset.