CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.152 rna-evm.model.Chr10.152 Chr10 5204163 5213530 PREDICTED: Phosphoserine aminotransferase nan K00831
gene-evm.TU.Chr10.1520 rna-evm.model.Chr10.1520 Chr10 48099371 48194638 PREDICTED: Zinc finger protein 775 GO:0003676 K09230
gene-evm.TU.Chr10.1525 rna-evm.model.Chr10.1525 Chr10 48232871 48248168 PREDICTED: Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial GO:0009058;GO:0030170 K00825
gene-evm.TU.Chr10.1527 rna-evm.model.Chr10.1527 Chr10 48298786 48312655 PREDICTED: Muscle, skeletal receptor tyrosine protein kinase nan K09644
gene-evm.TU.Chr10.153 rna-evm.model.Chr10.153 Chr10 5219932 5221026 PREDICTED: tripartite motif-containing protein 56 [EC:2.3.2.27] nan K12026
gene-evm.TU.Chr10.1531 rna-evm.model.Chr10.1531.2 Chr10 48394500 48437469 PREDICTED: Activated Cdc42 kinase-like GO:0004672;GO:0004713;GO:0005524;GO:0006468 K08886
gene-evm.TU.Chr10.1533 rna-evm.model.Chr10.1533 Chr10 48483189 48484142 PREDICTED: Hydroxycarboxylic acid receptor 2 GO:0004930;GO:0007186;GO:0016020 K04214
gene-evm.TU.Chr10.1534 rna-evm.model.Chr10.1534 Chr10 48491712 48492671 PREDICTED: Cysteinyl leukotriene receptor 1 GO:0004930;GO:0007186;GO:0016020 K04214
gene-evm.TU.Chr10.1535 rna-evm.model.Chr10.1535 Chr10 48498463 48498894 PREDICTED: G-protein coupled receptor 39 GO:0004930;GO:0007186;GO:0016020 K04284
gene-evm.TU.Chr10.1536 rna-evm.model.Chr10.1536 Chr10 48525214 48546604 PREDICTED: Uncharacterized protein C1orf158 homolog nan nan

For more detailed data, you can explore the Download section to access the full dataset.