CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1561 rna-evm.model.Chr10.1561 Chr10 49229718 49232434 PREDICTED: Jerky protein homolog-like GO:0003676;GO:0003677 K07499
gene-evm.TU.Chr10.1562 rna-evm.model.Chr10.1562 Chr10 49240416 49256748 PREDICTED: Ectin (Fragment) nan K16857
gene-evm.TU.Chr10.1563 rna-evm.model.Chr10.1563 Chr10 49259685 49260627 PREDICTED: Transposable element Tc1 transposase nan K07494
gene-evm.TU.Chr10.1564 rna-evm.model.Chr10.1564 Chr10 49262383 49263468 PREDICTED: Neuromedin-U receptor 2 GO:0004930;GO:0007186;GO:0008528;GO:0016020 K08428
gene-evm.TU.Chr10.1566 rna-evm.model.Chr10.1566 Chr10 49321755 49342072 PREDICTED: Uncharacterized methyltransferase YdaC nan K20081
gene-evm.TU.Chr10.1567_evm.TU.Chr10.1565 rna-evm.model.Chr10.1567_evm.model.Chr10.1565 Chr10 49272561 49370239 PREDICTED: CAD protein GO:0005524;GO:0006520;GO:0006807;GO:0016597;GO:0016743;GO:0016787;GO:0046872 K11540
gene-evm.TU.Chr10.1568 rna-evm.model.Chr10.1568 Chr10 49375198 49390891 PREDICTED: Zinc finger protein 560 GO:0003676 K22534
gene-evm.TU.Chr10.1569 rna-evm.model.Chr10.1569 Chr10 49407605 49412295 uncharacterized protein nan nan
gene-evm.TU.Chr10.157 rna-evm.model.Chr10.157 Chr10 5237528 5238085 PREDICTED: general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) nan K06947
gene-evm.TU.Chr10.1570 rna-evm.model.Chr10.1570 Chr10 49493452 49503950 uncharacterized protein nan K08213

For more detailed data, you can explore the Download section to access the full dataset.