CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1435 rna-evm.model.Chr10.1435 Chr10 45252320 45257281 uncharacterized protein nan K06274
gene-evm.TU.Chr10.1436 rna-evm.model.Chr10.1436 Chr10 45281044 45282294 PREDICTED: Potassium voltage-gated channel subfamily V member 1 GO:0005249;GO:0006813;GO:0008076;GO:0051260 K04887
gene-evm.TU.Chr10.1437_evm.TU.Chr10.1439 rna-evm.model.Chr10.1437_evm.model.Chr10.1439 Chr10 45290570 45457116 PREDICTED: Pleckstrin homology domain-containing family G member 5 GO:0005085;GO:0035023 K19464
gene-evm.TU.Chr10.1442 rna-evm.model.Chr10.1442 Chr10 45543192 45557761 uncharacterized protein nan K03152
gene-evm.TU.Chr10.1443 rna-evm.model.Chr10.1443 Chr10 45583472 45611707 PREDICTED: Phenylalanine--tRNA ligase beta subunit GO:0003723;GO:0004826 K01890
gene-evm.TU.Chr10.1444 rna-evm.model.Chr10.1444 Chr10 45608387 45613206 PREDICTED: Zinc finger protein 467 GO:0003676 K09191
gene-evm.TU.Chr10.1445 rna-evm.model.Chr10.1445 Chr10 45637723 45643697 PREDICTED: Solute carrier family 25 member 35 nan K15117
gene-evm.TU.Chr10.1446 rna-evm.model.Chr10.1446 Chr10 45656537 45663615 PREDICTED: LINE-1 retrotransposable element ORF2 protein nan K26653
gene-evm.TU.Chr10.1448 rna-evm.model.Chr10.1448 Chr10 45680898 45790539 PREDICTED: Kinesin-like protein KIF1A GO:0003777;GO:0005515;GO:0005524;GO:0007018;GO:0008017 K10392
gene-evm.TU.Chr10.1449 rna-evm.model.Chr10.1449 Chr10 45828870 45838911 PREDICTED: Cytochrome P450 4F6 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07426

For more detailed data, you can explore the Download section to access the full dataset.