CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1537 rna-evm.model.Chr10.1537 Chr10 48552048 48565020 PREDICTED: 28S ribosomal protein S22, mitochondrial nan K17401
gene-evm.TU.Chr10.1538 rna-evm.model.Chr10.1538 Chr10 48575366 48599059 PREDICTED: chitinase [EC:3.2.1.14] nan nan
gene-evm.TU.Chr10.154 rna-evm.model.Chr10.154 Chr10 5221082 5227040 uncharacterized protein nan K06666
gene-evm.TU.Chr10.1540 rna-evm.model.Chr10.1540 Chr10 48600890 48611912 PREDICTED: Peroxidasin GO:0005515 K23533
gene-evm.TU.Chr10.1541 rna-evm.model.Chr10.1541 Chr10 48620781 48625177 PREDICTED: 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] nan K26255
gene-evm.TU.Chr10.1542 rna-evm.model.Chr10.1542 Chr10 48629486 48630799 PREDICTED: Probable RNA-directed DNA polymerase from transposon BS nan K18440
gene-evm.TU.Chr10.1544 rna-evm.model.Chr10.1544 Chr10 48700652 48703330 PREDICTED: Papilin GO:0004867 K03909
gene-evm.TU.Chr10.1547 rna-evm.model.Chr10.1547.1 Chr10 48729903 49015913 PREDICTED: Agrin GO:0005509;GO:0005515;GO:0007213;GO:0043113;GO:0043236 K06254
gene-evm.TU.Chr10.1548 rna-evm.model.Chr10.1548 Chr10 49015267 49015750 PREDICTED: Agrin GO:0007213;GO:0043113;GO:0043236 K06254
gene-evm.TU.Chr10.1549 rna-evm.model.Chr10.1549 Chr10 49020518 49024061 PREDICTED: Dynein assembly factor with WDR repeat domains 1 nan K10953

For more detailed data, you can explore the Download section to access the full dataset.