CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1450 rna-evm.model.Chr10.1450 Chr10 45841421 45843447 PREDICTED: cytochrome P450 family 4 subfamily B polypeptide 1 [EC:1.14.14.1] nan K07426
gene-evm.TU.Chr10.1451 rna-evm.model.Chr10.1451 Chr10 45864609 45878304 PREDICTED: Cation-dependent mannose-6-phosphate receptor GO:0005768;GO:0005794;GO:0006622;GO:0019904 K10089
gene-evm.TU.Chr10.1452 rna-evm.model.Chr10.1452 Chr10 45882089 45884759 uncharacterized protein GO:0005164;GO:0006955;GO:0016020 K03161
gene-evm.TU.Chr10.1453 rna-evm.model.Chr10.1453 Chr10 45889833 45899943 PREDICTED: Potassium voltage-gated channel protein Shab GO:0005216;GO:0005249;GO:0006811;GO:0006813;GO:0008076;GO:0016020;GO:0051260;GO:0055085 K04890
gene-evm.TU.Chr10.1454 rna-evm.model.Chr10.1454 Chr10 45906733 45908996 PREDICTED: Ninjurin-1 GO:0007155;GO:0016020;GO:0042246 K16633
gene-evm.TU.Chr10.1455 rna-evm.model.Chr10.1455 Chr10 45916780 45933182 uncharacterized protein nan K10080
gene-evm.TU.Chr10.1456 rna-evm.model.Chr10.1456 Chr10 45985141 45985476 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan K24973
gene-evm.TU.Chr10.1457 rna-evm.model.Chr10.1457 Chr10 45990738 45991507 uncharacterized protein nan K07184
gene-evm.TU.Chr10.1458 rna-evm.model.Chr10.1458 Chr10 46012183 46023998 PREDICTED: Major facilitator superfamily domain-containing protein 8 GO:0005215;GO:0016020;GO:0055085 K12307
gene-evm.TU.Chr10.146 rna-evm.model.Chr10.146 Chr10 5092392 5108750 PREDICTED: Sodium- and chloride-dependent glycine transporter 2 GO:0016020 K05038

For more detailed data, you can explore the Download section to access the full dataset.