CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1481 rna-evm.model.Chr10.1481 Chr10 46683395 46691650 PREDICTED: Solute carrier family 25 member 35 nan K15117
gene-evm.TU.Chr10.1482 rna-evm.model.Chr10.1482 Chr10 46698904 46700367 PREDICTED: DNA transposase THAP9 GO:0004803;GO:0006313 K23209
gene-evm.TU.Chr10.1483 rna-evm.model.Chr10.1483 Chr10 46703753 46707369 PREDICTED: Carbohydrate sulfotransferase 9 GO:0008146;GO:0016020;GO:0016051 K09672
gene-evm.TU.Chr10.1484 rna-evm.model.Chr10.1484 Chr10 46717915 46830134 PREDICTED: Kinesin-like protein unc-104 GO:0003777;GO:0005524;GO:0007018;GO:0008017 K10392
gene-evm.TU.Chr10.1485 rna-evm.model.Chr10.1485 Chr10 46869788 46953947 PREDICTED: Leukotriene-B4 omega-hydroxylase 3 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07426
gene-evm.TU.Chr10.1486 rna-evm.model.Chr10.1486 Chr10 47174841 47182328 uncharacterized protein nan nan
gene-evm.TU.Chr10.1489 rna-evm.model.Chr10.1489 Chr10 47225280 47228434 uncharacterized protein nan nan
gene-evm.TU.Chr10.149 rna-evm.model.Chr10.149 Chr10 5139067 5163715 PREDICTED: Sodium- and chloride-dependent glycine transporter 2 GO:0016020 K05038
gene-evm.TU.Chr10.1490 rna-evm.model.Chr10.1490 Chr10 47237886 47245677 PREDICTED: Urease accessory protein G GO:0003924;GO:0006807;GO:0016151 K03189
gene-evm.TU.Chr10.1491 rna-evm.model.Chr10.1491 Chr10 47245595 47294634 PREDICTED: Urease GO:0006807;GO:0009039;GO:0016151;GO:0016787;GO:0043419 K01427

For more detailed data, you can explore the Download section to access the full dataset.