CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1466 rna-evm.model.Chr10.1466 Chr10 46110114 46111616 PREDICTED: Potassium voltage-gated channel subfamily V member 1 GO:0005249;GO:0006813;GO:0008076;GO:0051260 K04887
gene-evm.TU.Chr10.147 rna-evm.model.Chr10.147 Chr10 5110756 5116718 PREDICTED: Uncharacterized protein SPEM3 nan K19438
gene-evm.TU.Chr10.1471 rna-evm.model.Chr10.1471 Chr10 46242593 46242946 PREDICTED: Potassium voltage-gated channel subfamily D member 3 GO:0005249;GO:0006813;GO:0008076;GO:0051260 K04890
gene-evm.TU.Chr10.1472 rna-evm.model.Chr10.1472 Chr10 46254537 46259611 PREDICTED: Potassium voltage-gated channel subfamily V member 1 GO:0005249;GO:0006813;GO:0008076;GO:0051260 K04890
gene-evm.TU.Chr10.1473 rna-evm.model.Chr10.1473 Chr10 46264876 46466723 PREDICTED: Pleckstrin homology domain-containing family G member 5 GO:0005085;GO:0035023 K19464
gene-evm.TU.Chr10.1475 rna-evm.model.Chr10.1475 Chr10 46491285 46583664 uncharacterized protein nan K14196
gene-evm.TU.Chr10.1476 rna-evm.model.Chr10.1476 Chr10 46623323 46651034 PREDICTED: Phenylalanine--tRNA ligase beta subunit GO:0000287;GO:0003723;GO:0004826;GO:0005524;GO:0006432 K01890
gene-evm.TU.Chr10.1477 rna-evm.model.Chr10.1477 Chr10 46657331 46658586 PREDICTED: Transcription factor Sp4 GO:0003676 K09191
gene-evm.TU.Chr10.1479 rna-evm.model.Chr10.1479 Chr10 46671962 46672876 PREDICTED: Replicase polyprotein 1a nan K26952
gene-evm.TU.Chr10.1480 rna-evm.model.Chr10.1480 Chr10 46676066 46677716 uncharacterized protein GO:0005515 K18756

For more detailed data, you can explore the Download section to access the full dataset.