CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.155 rna-evm.model.Chr10.155 Chr10 5227079 5227723 PREDICTED: Tripartite motif-containing protein 2 nan K23533
gene-evm.TU.Chr10.1550 rna-evm.model.Chr10.1550 Chr10 49027474 49041431 PREDICTED: Transcription factor 19 GO:0005515 K06641
gene-evm.TU.Chr10.1551 rna-evm.model.Chr10.1551 Chr10 49046199 49059323 PREDICTED: Transmembrane protein 222 nan K20726
gene-evm.TU.Chr10.1552 rna-evm.model.Chr10.1552 Chr10 49069415 49070313 PREDICTED: Temptin nan nan
gene-evm.TU.Chr10.1553 rna-evm.model.Chr10.1553 Chr10 49072452 49074071 PREDICTED: THAP domain-containing protein 6 GO:0003676 K23204
gene-evm.TU.Chr10.1554 rna-evm.model.Chr10.1554 Chr10 49095151 49128319 PREDICTED: Macrophage mannose receptor 1 nan K06559
gene-evm.TU.Chr10.1557 rna-evm.model.Chr10.1557 Chr10 49153328 49181532 PREDICTED: Versican core protein nan K06560
gene-evm.TU.Chr10.1558 rna-evm.model.Chr10.1558 Chr10 49190081 49194620 PREDICTED: Protein SCO1 homolog, mitochondrial nan K23755
gene-evm.TU.Chr10.1559 rna-evm.model.Chr10.1559 Chr10 49196405 49206789 uncharacterized protein nan nan
gene-evm.TU.Chr10.1560 rna-evm.model.Chr10.1560 Chr10 49220917 49227046 PREDICTED: Hemicentin-1 nan K16857

For more detailed data, you can explore the Download section to access the full dataset.