CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.409 rna-evm.model.Chr1.409 Chr1 11723447 11732635 uncharacterized protein nan K02376
gene-evm.TU.Chr1.41 rna-evm.model.Chr1.41 Chr1 1581339 1588442 PREDICTED: KRAB domain-containing zinc finger protein nan K18745
gene-evm.TU.Chr1.410 rna-evm.model.Chr1.410 Chr1 11748249 11762202 PREDICTED: Heat shock 70 kDa protein 12A nan K04043
gene-evm.TU.Chr1.411 rna-evm.model.Chr1.411 Chr1 11771045 11779101 PREDICTED: Transcription initiation factor TFIID subunit 7 GO:0005669;GO:0006367 K03132
gene-evm.TU.Chr1.412 rna-evm.model.Chr1.412 Chr1 11782372 11786422 PREDICTED: Magnesium transporter NIPA2 GO:0015095;GO:0015693;GO:0016020 K22733
gene-evm.TU.Chr1.413 rna-evm.model.Chr1.413 Chr1 11798281 11804091 PREDICTED: Magnesium transporter NIPA2 GO:0015095;GO:0015693;GO:0016020 K22733
gene-evm.TU.Chr1.416 rna-evm.model.Chr1.416 Chr1 11976621 12017893 PREDICTED: Scavenger receptor cysteine-rich type 1 protein M130 GO:0005044;GO:0016020 K13912
gene-evm.TU.Chr1.417 rna-evm.model.Chr1.417 Chr1 12075412 12077221 PREDICTED: Galectin-3-binding protein GO:0005044;GO:0016020 K09624
gene-evm.TU.Chr1.419 rna-evm.model.Chr1.419 Chr1 12122751 12123884 PREDICTED: protein kinase D [EC:2.7.11.13] nan K16731
gene-evm.TU.Chr1.42 rna-evm.model.Chr1.42 Chr1 1588502 1588884 uncharacterized protein nan K23449

For more detailed data, you can explore the Download section to access the full dataset.