CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.40 rna-evm.model.Chr1.40 Chr1 1512894 1518074 PREDICTED: Transposable element Tcb1 transposase GO:0003677;GO:0006313;GO:0015074 K07494
gene-evm.TU.Chr1.400 rna-evm.model.Chr1.400 Chr1 11435534 11439565 PREDICTED: Peptidyl-prolyl cis-trans isomerase FKBP4 GO:0005515 K20097
gene-evm.TU.Chr1.401 rna-evm.model.Chr1.401 Chr1 11448665 11470752 PREDICTED: Large neutral amino acids transporter small subunit 1 GO:0016020;GO:0022857;GO:0055085 K13780
gene-evm.TU.Chr1.402 rna-evm.model.Chr1.402 Chr1 11481088 11491879 PREDICTED: Large neutral amino acids transporter small subunit 2 GO:0016020;GO:0022857;GO:0055085 K13780
gene-evm.TU.Chr1.403 rna-evm.model.Chr1.403 Chr1 11566842 11567125 uncharacterized protein nan nan
gene-evm.TU.Chr1.404 rna-evm.model.Chr1.404 Chr1 11568486 11581839 PREDICTED: Soluble scavenger receptor cysteine-rich domain-containing protein SSC5D GO:0005044;GO:0016020 K13912
gene-evm.TU.Chr1.405 rna-evm.model.Chr1.405 Chr1 11599917 11621346 PREDICTED: Heat shock 70 kDa protein 12A nan K04043
gene-evm.TU.Chr1.406 rna-evm.model.Chr1.406 Chr1 11671350 11697781 PREDICTED: Rho-associated protein kinase 2 [EC:2.7.11.1] GO:0005741;GO:0035694 K12478
gene-evm.TU.Chr1.407 rna-evm.model.Chr1.407 Chr1 11700260 11705366 uncharacterized protein nan K09525
gene-evm.TU.Chr1.408 rna-evm.model.Chr1.408 Chr1 11708652 11715725 PREDICTED: Heat shock 70 kDa protein 12B nan K04043

For more detailed data, you can explore the Download section to access the full dataset.