CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.582 rna-evm.model.Chr19.582 Chr19 19341227 19354656 uncharacterized protein nan K11244
gene-evm.TU.Chr19.583 rna-evm.model.Chr19.583 Chr19 19358157 19375097 PREDICTED: Calexcitin-2 GO:0005509 K15825
gene-evm.TU.Chr19.584 rna-evm.model.Chr19.584 Chr19 19390528 19418294 PREDICTED: UPF0394 inner membrane protein YeeE nan K07112
gene-evm.TU.Chr19.585 rna-evm.model.Chr19.585 Chr19 19446883 19452895 PREDICTED: Sodium-coupled monocarboxylate transporter 2 nan K14386
gene-evm.TU.Chr19.586 rna-evm.model.Chr19.586 Chr19 19453543 19462492 PREDICTED: Sodium-coupled monocarboxylate transporter 1 GO:0016020;GO:0022857;GO:0055085 K14386
gene-evm.TU.Chr19.587 rna-evm.model.Chr19.587 Chr19 19466177 19466533 PREDICTED: Sodium-coupled monocarboxylate transporter 1 GO:0016020;GO:0022857;GO:0055085 K14386
gene-evm.TU.Chr19.592 rna-evm.model.Chr19.592 Chr19 19617908 19627282 PREDICTED: UPF0394 inner membrane protein YeeE nan K07112
gene-evm.TU.Chr19.593 rna-evm.model.Chr19.593 Chr19 19693200 19695629 PREDICTED: Neuronal acetylcholine receptor subunit alpha-6 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04814
gene-evm.TU.Chr19.594 rna-evm.model.Chr19.594 Chr19 19711758 19717310 PREDICTED: Methyltransferase-like protein 25 nan K00573
gene-evm.TU.Chr19.595 rna-evm.model.Chr19.595 Chr19 19717462 19745931 PREDICTED: High mobility group protein 20A nan K24660

For more detailed data, you can explore the Download section to access the full dataset.