CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.386 rna-evm.model.Chr19.386 Chr19 13726837 13729471 PREDICTED: Hepatocyte growth factor nan K09644
gene-evm.TU.Chr19.387 rna-evm.model.Chr19.387 Chr19 13733162 13735291 PREDICTED: RNA-directed DNA polymerase from mobile element jockey nan K14530
gene-evm.TU.Chr19.39 rna-evm.model.Chr19.39 Chr19 2299421 2300822 uncharacterized protein nan nan
gene-evm.TU.Chr19.391 rna-evm.model.Chr19.391 Chr19 13787067 13808647 PREDICTED: E3 ubiquitin-protein ligase DZIP3 nan K10642
gene-evm.TU.Chr19.393 rna-evm.model.Chr19.393 Chr19 13827465 13860689 PREDICTED: CD109 antigen nan K06530
gene-evm.TU.Chr19.394 rna-evm.model.Chr19.394 Chr19 13902112 13921738 PREDICTED: CD109 antigen GO:0004866;GO:0005576;GO:0005615 K06530
gene-evm.TU.Chr19.395 rna-evm.model.Chr19.395 Chr19 13922142 13925208 PREDICTED: olfactory receptor nan K21237
gene-evm.TU.Chr19.396 rna-evm.model.Chr19.396 Chr19 13925278 13926763 PREDICTED: Zinc finger protein 358 GO:0000166;GO:0003676;GO:0003677;GO:0003887;GO:0006260 K23195
gene-evm.TU.Chr19.398 rna-evm.model.Chr19.398 Chr19 13942645 13944201 uncharacterized protein nan K06453
gene-evm.TU.Chr19.399 rna-evm.model.Chr19.399 Chr19 13946254 13968320 PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B nan K18547

For more detailed data, you can explore the Download section to access the full dataset.